libStatGen Software
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TestPileup.h
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/*
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* Copyright (C) 2011 Regents of the University of Michigan
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*/
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#include "Pileup.h"
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#include "PileupElementBaseQual.h"
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void
testPileup();
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class
TestPileupElement
:
public
PileupElementBaseQual
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{
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public
:
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// Overwrite to validate result.
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virtual
void
analyze
();
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};
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class
TestPileup
:
public
Pileup
<TestPileupElement>
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{
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public
:
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void
testPileupPosition();
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private
:
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};
PileupElementBaseQual
This class inherits from the base class and stores base and qualities.
Definition:
PileupElementBaseQual.h:26
TestPileupElement::analyze
virtual void analyze()
Perform the analysis associated with this class.
Definition:
TestPileup.cpp:25
TestPileupElement
Definition:
TestPileup.h:24
TestPileup
Definition:
TestPileup.h:33
Pileup
Class to perform a pileup of all reads by position, assuming the reads are coordinate sorted.
Definition:
Pileup.h:59
bam
test
TestPileup.h
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