libStatGen Software
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Main.cpp
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/*
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* Copyright (C) 2010 Regents of the University of Michigan
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*/
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#include <iostream>
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#include <string.h>
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#include <stdlib.h>
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#include "PrintRefPositions.h"
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int
main(
int
argc,
char
** argv)
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{
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std::string inFile =
"../../test/testFiles/sortedBam.bam"
;
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std::string indexFile =
"../../test/testFiles/sortedBam.bam.bai"
;
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std::string rname =
"1"
;
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int
startPosition = 1013;
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int
endPosition = 1751;
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if
(argc == 6)
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{
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inFile = argv[1];
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indexFile = argv[2];
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rname = argv[3];
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startPosition = atoi(argv[4]);
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endPosition = atoi(argv[5]);
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}
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printRefPositions(inFile, indexFile, rname, startPosition, endPosition);
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return
(0);
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}
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bam
examples
printRefPositions
Main.cpp
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