libStatGen Software
1
- a -
ABORT :
ErrorHandler
- b -
BASE_SPACE :
BaseAsciiMap
BASES :
SamRecord
BGZF :
InputFile
- c -
CLIPPED :
SamFilter
COLOR_SPACE :
BaseAsciiMap
COORDINATE :
SamFile
- d -
DEFAULT :
InputFile
del :
Cigar
- e -
EQUAL :
SamRecord
ERROR :
SamValidationError
EXCEPTION :
ErrorHandler
- f -
FAIL_IO :
GlfStatus
,
StatGenStatus
FAIL_MEM :
GlfStatus
,
StatGenStatus
FAIL_ORDER :
GlfStatus
,
StatGenStatus
FAIL_PARSE :
GlfStatus
,
StatGenStatus
FASTQ_CLOSE_ERROR :
FastQStatus
FASTQ_INVALID :
FastQStatus
FASTQ_NO_SEQUENCE_ERROR :
FastQStatus
FASTQ_OPEN_ERROR :
FastQStatus
FASTQ_ORDER_ERROR :
FastQStatus
FASTQ_READ_ERROR :
FastQStatus
FASTQ_SUCCESS :
FastQStatus
FILTERED :
SamFilter
FLAG :
SamFile
- g -
GZIP :
InputFile
- h -
hardClip :
Cigar
HD :
SamHeaderRecord
- i -
insert :
Cigar
INVALID :
GlfStatus
,
StatGenStatus
INVALID_CIGAR :
SamValidationError
INVALID_MAPQ :
SamValidationError
INVALID_MRNM :
SamValidationError
INVALID_POS :
SamValidationError
INVALID_QNAME :
SamValidationError
INVALID_QUAL :
SamValidationError
INVALID_REF_ID :
SamValidationError
INVALID_RNAME :
SamValidationError
INVALID_SORT :
StatGenStatus
INVALID_TAG :
SamValidationError
- m -
match :
Cigar
mismatch :
Cigar
- n -
NO_MORE_RECS :
StatGenStatus
none :
Cigar
NONE :
SamFilter
,
SamRecord
- p -
pad :
Cigar
PG :
SamHeaderRecord
- q -
QUERY_NAME :
SamFile
- r -
READ :
GlfFile
,
SamFile
RETURN :
ErrorHandler
RG :
SamHeaderRecord
- s -
skip :
Cigar
softClip :
Cigar
SQ :
SamHeaderRecord
SUCCESS :
GlfStatus
,
StatGenStatus
- u -
UNCOMPRESSED :
InputFile
UNKNOWN :
BaseAsciiMap
,
GlfStatus
,
StatGenStatus
UNSORTED :
SamFile
- w -
WARNING :
SamValidationError
WRITE :
GlfFile
,
SamFile
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1.8.18