libStatGen Software
1
Class Index
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FastQFile
LongCounter
PileupHelper
SamValidationErrors
FastQStatus
LongHash
PosList
SamValidator
__kstring_t
FileType
LongParamContainer
q
SetParameter
a
FilterTest
LongParameterList
ShiftIndelsTest
FortranFormat
LongParameters
QuickIndex
SmithWaterman
Alleles
g
m
r
SortedChunkList
AnalyzeClass
StatGenStatus
b
GenericSamInterface
MarkerInfo
Random
String
GenomeSequence
Matrix
IndexBase::Reference
StringAlias
BamIndex
genomeSequenceMmapHeader
MD5_CTX
ReferenceSequenceTest
StringArray
BamIndexFileTest
GenotypeList
MemoryMap
ReusableVector
StringDoubleHash
BamInterface
glfEntry
MemoryMapArray
ReusableVectorTest
StringHash
bamRecordStruct
GlfException
MemoryMapArrayHeader
ReusableVectorTestDataType
StringHashBase
BaseAsciiMap
GlfFile
MemoryMapArrayTest
RunningStat
StringIntHash
BaseComposition
GlfFileReader
MemoryMapGenericHeader
s
StringIntMap
BaseCount
GlfFileWriter
MiniDeflate
StringMap
baseQualityConvertor
glfHandler
MockGenomeSequence
SamCoordOutput
StringParameter
BaseUtilities
GlfHeader
modify
SamCoordOutputTest
SwitchParameter
BasicHash
glfIndel
modifyVar
SamFile
t
BGZF
GlfRecord
n
SamFileHeader
IndexBase::Bin
GlfRefSection
SamFileReader
Tabix
c
GlfStatus
NonOverlapRegionPos
SamFileWriter
TestPileup
GlobalTestEnvironment
NonOverlapRegions
SamFilter
TestPileupElement
CharBuffer
GreedyTupleAligner
NonOverlapRegionsTest
SamFlag
TestPosList
Chromosome
GzipHeader
o
SamHeaderHD
TestValidate
ChromosomeInfo
h
SamHeaderPG
TestWrite
Chunk
OptionList
SamHeaderRecord
Timing
Cigar
HiddenDouble
p
SamHeaderRG
u
CigarHelper
HiddenInteger
SamHeaderSQ
CigarHelperTest
HiddenString
PackedArrayTest
SamHeaderTag
UncompressedFileType
Cigar::CigarOperator
HiddenSwitch
PackedRead
SamHelper
UnitTest
CigarRoller
i
PackedSequenceData
SamInterface
v
CigarRollerTest
PackedVector
SamQuerySeqWithRef
ColumnExtras
IFILE_Test
Parameter
SamQuerySeqWithRefIter
Vector
d
IndexBase
ParameterList
SamRecord
VectorFunc
InputFile
Pedigree
SamRecordHelper
w
defaultPileup
IntArray
PedigreeDescription
SamRecordHelperTest
DoubleParameter
IntHash
PedigreeGlobals
SamRecordPool
SmithWaterman::weight
e
IntParameter
PedigreeKey
SamRecordPoolTest
Weight
k
Person
SamReferenceInfo
emptyGenericHeader
PhoneHome
SamSingleBaseMatchInfo
EqualsTest
knetFile_s
Pileup
SamStatistics
ErrorHandler
l
PileupElement
SamTags
f
PileupElementBaseQual
SamValidationError
ListParameter
Family
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