libStatGen Software
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PosList.h
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/*
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* Copyright (C) 2011 Regents of the University of Michigan
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*/
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#ifndef __POSLIST_H__
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#define __POSLIST_H__
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#include <vector>
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/// Store refID/position, but does not store values < 0.
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class
PosList
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{
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public
:
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/// Constructor
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PosList
();
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/// Reserves space for numRefs reference ids and numPositions for each id.
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PosList
(
int
numRefs,
int
numPositions);
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/// Destructor
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virtual
~PosList
();
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/// Add the specified reference id/position (negative values will not be
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/// added).
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void
addPosition
(
int
refID,
int
refPosition);
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/// Return whether or not this list contains the specified reference ID
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/// and position (negative values will automatically return false).
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bool
hasPosition
(
int
refID,
int
refPosition);
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protected
:
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PosList
(
const
PosList
& p);
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void
initVars();
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// 2-D vector.
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// indexed by [referenceID][position].
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std::vector < std::vector<bool> > myPosList;
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int
myNumRefs;
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int
myNumPos;
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};
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#endif
PosList::PosList
PosList()
Constructor.
Definition:
PosList.cpp:21
PosList::~PosList
virtual ~PosList()
Destructor.
Definition:
PosList.cpp:36
PosList
Store refID/position, but does not store values < 0.
Definition:
PosList.h:25
PosList::hasPosition
bool hasPosition(int refID, int refPosition)
Return whether or not this list contains the specified reference ID and position (negative values wil...
Definition:
PosList.cpp:81
PosList::addPosition
void addPosition(int refID, int refPosition)
Add the specified reference id/position (negative values will not be added).
Definition:
PosList.cpp:42
bam
PosList.h
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