Uses of Package
pal.math

Packages that use pal.math
Package
Description
Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).
Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.
Classes for math stuff such as optimisation, numerical derivatives, matrix exponentials, random numbers, special function etc.
Classes for the analysis of "measurably evolving populations" (mep).
Classes that don't fit elsewhere ;^)
Classes describing substitution models, i.e.
 
Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).