Uses of Interface
pal.misc.SampleInformation
Packages that use SampleInformation
Package
Description
Classes for the analysis of "measurably evolving populations" (mep).
Classes that don't fit elsewhere ;^)
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Uses of SampleInformation in pal.mep
Methods in pal.mep with parameters of type SampleInformationModifier and TypeMethodDescriptionDeltaModel.buildConstraintModel
(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel) MutationRateModel.Factory.buildConstraintModel
(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel) -
Uses of SampleInformation in pal.misc
Classes in pal.misc that implement SampleInformationMethods in pal.misc that return SampleInformationModifier and TypeMethodDescriptionSampleInformation.Factory.createSampleInformation
(String[] allLeafIDs) -
Uses of SampleInformation in pal.treesearch
Constructors in pal.treesearch with parameters of type SampleInformationModifierConstructorDescriptionFixedBSRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate) FixedSRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate) MRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel) MRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double[] rateChangeTimes) SRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel) SRDTGlobalClockModel
(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, boolean allowMetaRate)