Uses of Class
pal.tree.SplitSystem
Packages that use SplitSystem
Package
Description
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of SplitSystem in pal.tree
Methods in pal.tree that return SplitSystemModifier and TypeMethodDescriptionstatic SplitSystem
creates a split system from a tree (using a pre-specified order of sequences)static SplitSystem
creates a split system from a tree (using tree-induced order of sequences)Methods in pal.tree with parameters of type SplitSystemModifier and TypeMethodDescriptionstatic double
TreeUtils.getRobinsonFouldsDistance
(SplitSystem s1, Tree t2) computes Robinson-Foulds (1981) distance between two treesstatic double
TreeUtils.getRobinsonFouldsRescaledDistance
(SplitSystem s1, Tree t2) computes Robinson-Foulds (1981) distance between two trees rescaled to a number between 0 and 1