Uses of Interface
pal.substmodel.RateMatrixGroup
Packages that use RateMatrixGroup
Package
Description
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
Classes describing substitution models, i.e.
-
Uses of RateMatrixGroup in pal.eval
Methods in pal.eval with parameters of type RateMatrixGroupModifier and TypeMethodDescriptionstatic final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double splitTime) static final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double[] classProbabilities, double splitTime) static final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime) static final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime) -
Uses of RateMatrixGroup in pal.substmodel
Classes in pal.substmodel that implement RateMatrixGroupModifier and TypeClassDescriptionclass
class
class