Package pal.supgma
Interface RateHandler
public interface RateHandler
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Nested Class Summary
Nested Classes -
Method Summary
Modifier and TypeMethodDescriptionvoid
adjustDistances
(double[][] matrix, TimeOrderCharacterData tocd) void
fillInLSInfo
(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes) generateRateModelFactory
(double[] deltas, TimeOrderCharacterData tocd) getInfo()
int
boolean
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Method Details
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getNumberOfParameters
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adjustDistances
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isCICompatible
boolean isCICompatible() -
getInfo
String getInfo() -
fillInLSInfo
void fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes) -
generateRateModelFactory
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