Class RateMatrixUtils

java.lang.Object
pal.substmodel.RateMatrixUtils

public class RateMatrixUtils extends Object
Version:
$Id: RateMatrixUtils.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $
Author:
Korbinian Strimmer, Alexei Drummond, Matthew Goode
  • Constructor Details

    • RateMatrixUtils

      public RateMatrixUtils()
  • Method Details

    • getInstance

      public static RateMatrix getInstance(int typeID, int modelID, double[] params, double[] freq)
      Create rate matrix given model and data type codes
      Parameters:
      typeID - code for data type
      modelID - code for model of substitution
      params - model parameters
      freq - model frequencies
      Returns:
      rate matrix
    • getCopy

      public static final RateMatrix[] getCopy(RateMatrix[] toCopy)